ALS Research: More TDP-43, and Peripherin No Longer in Periphery

In the drama unfolding within the mysterious protein clumps that crop up in amyotrophic lateral sclerosis (ALS) and other neurodegenerative disorders, a newer player could be joining the current star under the limelight. TAR DNA binding protein (TDP-43) took center stage in late 2006, when it was discovered in the so-called inclusion bodies found in ailing motor neurons of patients with ALS or frontotemporal lobar degeneration with ubiquitin-positive inclusions (FTLD-U) (see ARF related news story). Reporting in last week’s Journal of Biological Chemistry online, scientists have reproduced ALS/FTLD-U phenotypes in cultured cells by introducing TDP-43 mutants incapable of proper cellular trafficking. Another research team, publishing February 20 in the Journal of Neuroscience, has identified a novel splice form of peripherin, a lesser studied component of ALS inclusions, and found it upregulated in ALS and associated with disease pathology. Given TDP-43’s role as a splicing factor, some now wonder whether TDP-43 abnormalities could give rise to the odd peripherin isoforms that might underlie ALS. Of course, many ifs and buts stand in the way of a direct connection between TDP-43 and peripherin, but it is tempting for now to speculate such interplay.

In the first study, researchers led by Virginia Lee—whose group initially identified ubiquitinated TDP-43 in ALS and FTLD-U inclusions—strengthen the case for TDP-43’s starring role. This paper from her team at the University of Pennsylvania School of Medicine, Philadelphia, comes at the heels of a pair of studies that analyzed DNA from ALS patients and found mutations in a region of TDP-43 thought to be important for protein-protein interactions (see ARF related news story).

A predominantly nuclear protein in normal cells, TDP-43 dramatically redistributes into insoluble aggregates in the cytoplasm of diseased motor neurons in ALS and FTLD-U patients. How this occurs remains a mystery, but part of the answer might lie within the signals that direct TDP-43 in and out of the nucleus, the scientists found. By expressing TDP-43 mutants containing faulty nuclear localization or nuclear export sequences, first author Matthew Winton and colleagues were able to recreate in cultured cells the signature redistribution of TDP-43 found in ALS and FTLD-U lesions. The findings suggest that ALS/FTLD-U pathology could be linked to disturbed intracellular trafficking of TDP-43.

Whereas the 2006 discovery of TDP-43 in ALS/FTLD-U lesions has unleashed a flood of some 80 papers since, the peripherin line of investigation to date remains confined to a couple of labs. One such group, led by Janice Robertson at the University of Toronto, Ontario, reported several months ago the colocalization of peripherin with TDP-43 in the same ALS inclusions (Sanelli et al., 2007). In that paper, they also raised the possibility—based on more detailed structural representations of these inclusions obtained from three-dimensional deconvolution imaging—that TDP-43 may not be the key ubiquitinated target within the inclusions.

In the intensifying quest to understand these enigmatic structures, Robertson’s present paper has brought peripherin into closer view. What led her team to suspect aberrant peripherin splicing in ALS in the first place It has been known for nearly a decade that overexpression of peripherin, a neuronal intermediate filament protein, kills motor nerve cells in transgenic mice (Beaulieu et al., 1999), and variations within the peripherin gene have come to light in a few ALS cases. In addition, Robertson and colleagues have shown abnormal expression of a neurotoxic peripherin splice form in transgenic mouse models of ALS (Robertson et al., 2003). While hunting for the human equivalent of this neurotoxic splice variant, the scientists stumbled upon a novel peripherin isoform, which they describe in the current paper.

Shangxi Xiao and colleagues report that this new variant, dubbed Per28, is expressed at low levels in human spinal cord cells, upregulated in ALS tissue, and associates with round inclusion bodies characteristic of ALS and FTLD-U. The scientists have yet to look for Per28 in brain tissue from FTLD-U patients, Robertson says, but that’s next on the agenda. So far, their analysis of brain sections from people with Alzheimer and Parkinson diseases has revealed no Per28.

Given that regulation of exon splicing is one of TDP-43’s known functions, it is tempting to speculate that the deregulated splicing we have observed for peripherin may be causally linked to abnormalities of TDP-43, write the authors.

Noting the loss of TDP-43 immunoreactivity in the nucleus where it would normally function, Robertson told ARF, we are trying to deplete TDP-43 in the nucleus and determine if this affects peripherin splicing.—Esther Landhuis.

Esther Landhuis is a science journalist in Dublin, California.

Winton MJ, Igaz LM, Wong MM, Kwong LK, Trojanowski JQ, Lee VM.
Disturbance of nuclear and cytoplasmic Tar DNA binding protein (TDP-43) induces disease-like redistribution, sequestration and aggregate formation.
J Biol Chem. 2008 Feb 27. Abstract

Xiao S, Tjostheim S, Sanelli T, McLean JR, Horne P, Fan Y, Ravits J, Strong MJ, Robertson J.
An aggregate-inducing peripherin isoform generated through intron retention is upregulated in amyotrophic lateral sclerosis and associated with disease pathology.
J Neurosci. 2008 Feb 20;28(8):1833-40. Abstract

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